Skills for your AI
Guides and performs statistical analysis on biochemical datasets, from cleaning and preprocessing through hypothesis testing, regression, multivariate, survival, power, Bayesian, time series, meta-analysis and reporting. Use when a user provides biochemical da
Processes and interprets DNA, RNA, protein, and metabolite data—sequence alignment, genome assembly, phylogenetics, structure prediction, transcriptomics, variant calling, annotation, visualization, statistics, comparative genomics, and drug target analysis. U
Retrieves and prepares single-cell expression data from the CZ CELLxGENE Census by cell type, tissue, disease, or organism, including metadata exploration, out-of-core statistics, and PyTorch or Scanpy integration. Use when the user asks about Census cell coun
Cleans clinical datasets and runs descriptive, inferential, regression, survival, multivariate, time series, Bayesian, power, meta-analysis, and visualization work with exact figures. Use when a user provides clinical trial data or asks for data cleaning, stat
Resolves entity names, coordinates, and Wikidata IDs to Data Commons DCIDs, discovers available statistical variables, fetches observations, explores the knowledge graph, and processes results with Pandas. Use when the user asks for public statistical data suc
Conducts structured multi-source research through NotebookLM and delivers formatted research briefs with optional studio artifacts. Use when the user requests market, competitive, prospect, trend, proposal, or academic research, asks for a research brief, or w
Analyzes scientific data files across 200+ formats and produces markdown EDA reports covering structure, content, quality, and next-step recommendations. Use when the user gives a path to a scientific data file and asks to analyze, explore, check quality, summ
Collects, interprets, quality-checks, and reports geochemical data from rock, soil, water, and waste samples, covering statistics, anomaly detection, mapping, modeling, and environmental impact. Use when the user asks to compile survey data, prepare samples, o
Retrieves SNP-trait associations, p-values, and summary statistics from the NHGRI-EBI GWAS Catalog REST and Summary Statistics APIs. Use when the user asks about traits linked to an rs ID, variants for a disease, gene, study accession, or chromosomal region, o
Designs and executes research protocols to test a claim, gathering data, running analysis, and delivering a verdict with a confidence level. Use when the user gives a hypothesis to test, asks for a study design, needs evidence gathered and analyzed, or wants a
Turns IoT sensor data into collection, preprocessing, analysis, anomaly detection, predictive maintenance, automation, and domain application guidance. Use when the user needs help with IoT data pipelines, streaming analysis, device failure prediction, control
Creates and edits reproducible Jupyter notebooks for experiments, exploratory analysis, or tutorials using bundled templates and a helper script. Use when the user asks for a new notebook, wants to scaffold or populate one, needs safe edits to an existing .ipy
Cleans, summarizes, analyzes, visualizes, and interprets laboratory data for lab managers, covering statistics, trends, correlations, regression, clustering, QC monitoring, and operational comparisons. Use when the user provides lab data and asks for cleaning,
Automates LabArchives electronic lab notebook operations via the LabArchives API, including authentication, notebook backup, entry and attachment management, site reports, and third-party integrations. Use when the user asks to set up LabArchives API access, r
Analyzes microbial ecology data from collection and organization through statistical, diversity, functional, bioinformatic, interaction, longitudinal, and visualization tasks. Use when the user needs to extract and structure microbial data, compute diversity o
Evaluates scientific manuscripts and grant proposals for rigor, reproducibility, statistics, ethics, and reporting standards, returning structured review reports. Use when a user shares a manuscript, paper, or grant proposal and asks for peer review, initial a
Analyzes quality control data, runs statistical tests, generates QC reports and visualizations, performs SPC, root cause and compliance analysis, and applies advanced quality methodologies like FMEA, DOE, Six Sigma and MSA. Use when the user provides QC data,
Processes and analyzes LC-MS/MS proteomics and metabolomics data with PyOpenMS, covering file I/O, signal processing, feature detection, peptide and protein identification, metabolomics workflows, and export to pandas or NumPy. Use when the user asks to load m
Guides process improvement analysts through root cause analysis, from data collection and pattern analysis to hypothesis testing, prioritization, action planning, and reporting. Use when the user needs to gather and analyze data, identify or prioritize root ca
Critically appraises research studies and scientific claims for methodology, bias, statistics and evidence quality using GRADE and Cochrane Risk of Bias. Use when the user asks to critique a study design, check for biases, evaluate statistical methods, rate ev
Analyzes biological sequences, alignments, phylogenetic trees, and diversity metrics with scikit-bio, including ordination and permutation-based statistical tests. Use when the user needs sequence manipulation, pairwise or multiple alignment, tree construction
Use when Codex should act as the Model QA Specialist specialist from Agency Agents. Independent model QA expert who audits ML and statistical models end-to-end - from documentation review and data reconstruction to replication, calibration testing, interpretab
Selects, runs, and reports statistical tests (t-tests, ANOVA, chi-square, regression, correlation, Bayesian) with assumption checks, effect sizes, power analysis, and APA 7th edition reporting. Use when the user asks which test fits their data, needs assumptio
Guides data analysts through statistical analysis tasks from data cleaning and EDA to hypothesis testing, regression, ANOVA, time series, clustering, survival analysis, and interpretation. Use when the user asks to clean a dataset, run a statistical test, buil
