All-in-one AI plugin for Bioinformaticians: one download

Skills for bioinformaticians 17

• pysamFetches reads and variants by region, computes coverage, and filters alignments. Example: pull all reads over TP53 from a sorted BAM.
• statistical analysis assistantGuides you from data cleaning and EDA through tests, regression, and survival analysis. Example: test expression differences between treated and control samples.
• code debugging assistantReviews code and stack traces, writes tests, and fixes environment or tooling problems. Example: diagnose a Snakemake rule exiting with code 1.
• research data visualization assistantChooses and refines charts, interactive plots, and dashboards, including color schemes and large datasets. Example: a coverage track across many samples.
• seabornBuilds publication-quality statistical graphics with minimal code, including grouped and faceted plots. Example: boxplots of gene expression by treatment group.
• scientific visualizationCreates journal-ready figures at required dimensions and formats. Example: a three-panel figure exported as 300 dpi TIFF for submission.

Plus a start-here assistant, the prompt library and the app builder, and for members the daily brief.

Ready-made prompts 22

• Troubleshoot Pipeline Errors3 prompts, like Error Message Explanation and Resolution
• Write and Debug Code3 prompts, like Write a Biological Data Processing Script
• Handle Biological File Formats3 prompts, like Parse SAM or VCF File
• Understand Methods and Statistics2 prompts, like Explain a Statistical Method Plainly
• Plan Analyses and Pipelines3 prompts, like Turn a Biological Question into an Analysis Plan
• Interpret QC and Results3 prompts, like Read a Sequencing QC Report
• Create Data Visualizations2 prompts, like Choose the Right Plot Type

Apps you can build with AI 3

• Evidence-backed notebook analysis and reporting workspaceKeeps every analysis result linked to its code and inputs, cutting review and rework time before a report goes out. Demo included.
• Source-linked AI workspace with notes, code and filesHolds notes, code, and data files in one owned workspace so you stop switching between tools mid-analysis. Demo included.
• Source-linked document explanation and study consoleExplains papers and documentation with every claim linked back to the source, so reading takes less time. Demo included.

Your Grok Bot team 12

• Dnanexus IntegrationManage DNAnexus cloud genomics platform: build apps, run workflows, upload/download data, and automate pipelines with dxpy.
• PysamRead, write, and analyze genomic alignment, variant, and sequence files with Python.
• GgetRuns bioinformatics queries across 20+ genomic databases from chat.
• Uniprot DatabaseRetrieve protein sequences, annotations, and ID mappings from UniProt via REST API.
• Ena DatabaseRetrieve nucleotide sequences, raw reads, and genome assemblies from the European Nucleotide Archive.
• Ensembl DatabaseQuery Ensembl genome database for gene lookups, sequences, variants, and comparative genomics across 250+ species.
• ScanpyGuide single-cell RNA-seq analysis from loading through cell type annotation and trajectory inference.
• Gene DatabaseQueries NCBI Gene by symbol or ID, retrieves sequences, GO terms, and phenotypes for gene annotation.
• EtetoolkitAnalyze phylogenetic trees: manipulate, detect events, integrate NCBI taxonomy, and visualize.
• Cosmic DatabaseDownloads and queries cancer mutation data from the COSMIC database for research.
• Scikit BioAnalyzes biological sequences, alignments, trees, and diversity metrics for microbiome studies.
• EsmDesigns and analyzes proteins using ESM language models for sequence, structure, and function tasks.